Research workbench
Streptomyces platensis isomigrastatin ketosynthase domain mgsf KS6
Analyse Streptomyces platensis isomigrastatin ketosynthase domain mgsf KS6 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4TKT
- Type
- protein
- Length
- 589 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- At-less polyketide synthase
- UniProt
- D0U2E4
- Ligands
- SO4, CL
- Pockets
- 6 · best druggability 0.75
Structure
x-ray diffraction · 1 distinct chain · 37% helix, 20% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | At-less polyketide synthase | protein | 589 | 37% helix, 20% strand | D0U2E4 |
Ligands and binding sites
- SO4 · Sulfate ion · ion · 2 copies · chains A
- CL · Chloride ion · ion · chains A
- GOL · Glycerol · additive · 2 copies · chains A
- MES · 2-(N-morpholino)-ethanesulfonic acid · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
6 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 723 | 0.75 | 0.80 | 66 | GOL |
| 2 | 50 | 0.71 | 0.99 | 17 | empty |
| 3 | 245 | 0.65 | 0.83 | 35 | empty |
| 4 | 140 | 0.55 | 0.82 | 23 | empty |
| 5 | 51 | 0.31 | 0.77 | 18 | empty |
Modifications
Observed in the structure: 8 modified (engineered).
Compared structures
- 4TKT · Streptomyces platensis isomigrastatin ketosynthase domain MgsF KS6 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt D0U2E4
- Elsewhere: RCSB PDB 4TKT · PDBe 4TKT · UniProt D0U2E4
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