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Crystal structure of cyclophilin mutant V33A from leishmania donovani at 2.3 ångström.
Analyse Crystal structure of cyclophilin mutant V33A from leishmania donovani at 2.3… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4S1J
- Type
- protein
- Length
- 332 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Peptidyl-prolyl cis-trans isomerase
- EC
- 5.2.1.8
- UniProt
- E9B8M3
- Pockets
- 2 · best druggability 0.40
Structure
x-ray diffraction · 1 distinct chain · 16% helix, 33% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Peptidyl-prolyl cis-trans isomerase (EC 5.2.1.8) | protein | 166 | 16% helix, 33% strand | E9B8M3 |
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 131 | 0.40 | 0.74 | 28 | empty |
| 2 | 50 | 0.28 | 0.75 | 19 | empty |
Interfaces
1 interface between chains.
- A–B · 46 Ų buried · 1 hydrogen bond · protein-protein
Compared structures
- 4S1J · Crystal structure of cyclophilin mutant V33A from Leishmania donovani at 2.3 angstrom. · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt E9B8M3
- Elsewhere: RCSB PDB 4S1J · PDBe 4S1J · UniProt E9B8M3
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