Research workbench
Biphenylalanine modified threonyl-tRNA synthetase from pyrococcus abyssi: 11BIF, 42F, 79S, and 123A mutant
Analyse Biphenylalanine modified threonyl-tRNA synthetase from pyrococcus abyssi… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4S0I
- Type
- protein
- Length
- 141 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Threonine--tRNA ligase
- EC
- 6.1.1.3
- UniProt
- Q9UZ14
- Pockets
- 1 · best druggability 0.52
Structure
x-ray diffraction · 1 distinct chain · 32% helix, 40% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Threonine--tRNA ligase (EC 6.1.1.3) | protein | 141 | 32% helix, 40% strand | Q9UZ14 |
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 177 | 0.52 | 0.78 | 21 | empty |
Modifications
Observed in the structure: 1 modified (nonstandard).
Compared structures
- 4S0I · Biphenylalanine modified threonyl-tRNA synthetase from Pyrococcus abyssi: 11BIF, 42F… · the same entry in another collection · chain A against A, TM-score 1.00
- Q9UZ14 · AlphaFold monomer V2.0 prediction for threonine--tRNA ligase (Q9UZ14) · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9UZ14
- Elsewhere: RCSB PDB 4S0I · PDBe 4S0I · UniProt Q9UZ14
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