Research workbench

2.1 ångström crystal structure of stage II sporulation protein D from bacillus anthracis

Analyse 2.1 ångström crystal structure of stage II sporulation protein D from bacillus… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 4RWR
Type: protein
Length: 535 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Stage II sporulation protein D
UniProt: Q81K14
Pockets: 5 · best druggability 0.70

Structure

x-ray diffraction · 2 distinct chains · 36% helix, 24% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Stage II sporulation protein D	protein	267	36% helix, 24% strand	Q81K14
B	Stage II sporulation protein D	protein	268	36% helix, 23% strand	Q81K14

Pockets

5 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	577	0.70	0.79	56	empty
2	600	0.67	0.77	65	empty
3	88	0.43	0.79	16	empty
4	56	0.36	0.78	10	empty
5	52	0.29	0.76	11	empty

Interfaces

1 interface between chains.

A–B · 541 Å² buried · 12 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 12 modified (engineered).

Compared structures

4RWR · 2.1 Angstrom Crystal Structure of Stage II Sporulation Protein D from Bacillus anthracis · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q81K14
Elsewhere: RCSB PDB 4RWR · PDBe 4RWR · UniProt Q81K14

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.