Research workbench
Crystal structure of a member of the lipolytic protein G-D-S-L family from veillonella parvula dsm 2008
Analyse Crystal structure of a member of the lipolytic protein G-D-S-L family from… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4RW0
- Type
- protein
- Length
- 367 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Lipolytic protein G-D-S-L family
- UniProt
- D1BPP2
- Ligands
- NA
- Pockets
- 3 · best druggability 0.49
Structure
x-ray diffraction · 2 distinct chains · 48% helix, 15% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Lipolytic protein G-D-S-L family | protein | 184 | 48% helix, 15% strand | D1BPP2 |
| B | Lipolytic protein G-D-S-L family | protein | 183 | 48% helix, 15% strand | D1BPP2 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 95 | 0.49 | 0.81 | 15 | empty |
| 2 | 119 | 0.43 | 0.77 | 20 | GOL |
| 3 | 81 | 0.40 | 0.78 | 19 | empty |
Interfaces
1 interface between chains.
- A–B · 531 Ų buried · 3 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 12 modified (engineered).
Compared structures
- 4RW0 · Crystal structure of a member of the lipolytic protein G-D-S-L family from Veillonella… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt D1BPP2
- Elsewhere: RCSB PDB 4RW0 · PDBe 4RW0 · UniProt D1BPP2
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