Research workbench
Structure of the bacterial zn-transporter znud from neisseria meningitidis (soaked with 20 micromolar zinc)
Analyse Structure of the bacterial zn-transporter znud from neisseria meningitidis… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4RVW
- Type
- protein
- Length
- 610 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Znud
- UniProt
- Q9JZN9
- Ligands
- ZN, SO4
- Pockets
- 7 · best druggability 0.84
Structure
x-ray diffraction · 1 distinct chain · 3% helix, 55% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Znud | protein | 610 | 3% helix, 55% strand | Q9JZN9 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
7 pockets found on a 1 Å grid, 5 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 291 | 0.84 | 0.95 | 35 | empty |
| 2 | 842 | 0.84 | 0.86 | 99 | empty |
| 3 | 543 | 0.81 | 0.87 | 58 | empty |
| 4 | 84 | 0.67 | 0.92 | 18 | empty |
| 5 | 206 | 0.54 | 0.78 | 28 | empty |
Compared structures
- 4RVW · Structure of the bacterial Zn-transporter ZnuD from Neisseria meningitidis (soaked with… · the same entry in another collection · chain A against A, TM-score 1.00
- Q9JZN9 · AlphaFold monomer V2.0 prediction for probable tonb-dependent receptor NMB0964 (Q9JZN9) · a predicted model of the same protein · chain A against A, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9JZN9
- Elsewhere: RCSB PDB 4RVW · PDBe 4RVW · UniProt Q9JZN9
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