Research workbench
The crystal structure of psbp from zea mays
Analyse The crystal structure of psbp from zea mays in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4RTH
- Type
- protein
- Length
- 333 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Membrane-extrinsic protein of photosystem II psbp
- UniProt
- A0A096Q0E5
- Pockets
- 4 · best druggability 0.77
Structure
x-ray diffraction · 2 distinct chains · 17% helix, 45% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Membrane-extrinsic protein of photosystem II psbp | protein | 167 | 17% helix, 44% strand | A0A096Q0E5 |
| B | Membrane-extrinsic protein of photosystem II psbp | protein | 166 | 17% helix, 45% strand | A0A096Q0E5 |
Pockets
4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 996 | 0.77 | 0.80 | 77 | empty |
| 2 | 76 | 0.32 | 0.74 | 14 | empty |
| 3 | 50 | 0.28 | 0.75 | 17 | empty |
| 4 | 53 | 0.28 | 0.75 | 16 | empty |
Interfaces
1 interface between chains.
- A–B · 544 Ų buried · 12 hydrogen bonds · protein-protein
Compared structures
- 4RTH · The crystal structure of PsbP from Zea mays · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A096Q0E5
- Elsewhere: RCSB PDB 4RTH · PDBe 4RTH · UniProt A0A096Q0E5
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