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The structure of the effector protein from pseudomonas syringae pv. syringae strain 61
Analyse The structure of the effector protein from pseudomonas syringae pv. syringae… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4RSW
- Type
- protein
- Length
- 510 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- HOPA1
- UniProt
- Q83YM3
- Pockets
- 7 · best druggability 0.79
Structure
x-ray diffraction · 1 distinct chain · 47% helix, 19% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | HOPA1 | protein | 255 | 47% helix, 19% strand | Q83YM3 |
Pockets
7 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 111 | 0.79 | 0.98 | 22 | empty |
| 2 | 142 | 0.60 | 0.84 | 24 | empty |
| 3 | 314 | 0.59 | 0.78 | 53 | empty |
| 4 | 142 | 0.58 | 0.83 | 25 | empty |
| 5 | 77 | 0.45 | 0.81 | 21 | empty |
Interfaces
1 interface between chains.
- A–B · 1700 Ų buried · 33 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 18 modified (engineered).
Compared structures
- 4RSW · The structure of the effector protein from Pseudomonas syringae pv. syringae strain 61 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q83YM3
- Elsewhere: RCSB PDB 4RSW · PDBe 4RSW · UniProt Q83YM3
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