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Re-refined structure of 1TE0 - structural analysis of degs, a stress sensor of the bacterial periplasm

Analyse Re-refined structure of 1TE0 - structural analysis of degs, a stress sensor of… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 4RQY
Type: protein
Length: 590 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Protease degs
UniProt: H9UXC8
Ligands: PO4
Pockets: 7 · best druggability 0.44

Structure

x-ray diffraction · 2 distinct chains · 15% helix, 38% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Protease degs	protein	299	14% helix, 38% strand	H9UXC8
B	Protease degs	protein	291	16% helix, 38% strand	H9UXC8

Ligands and binding sites

PO4 · Phosphate ion · ion · 2 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

7 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	78	0.44	0.81	14	empty
2	158	0.40	0.73	27	empty
3	84	0.37	0.76	20	empty
4	52	0.32	0.77	13	empty
5	80	0.31	0.73	17	empty

Interfaces

1 interface between chains.

A–B · 384 Å² buried · 6 hydrogen bonds · protein-protein

Compared structures

4RQY · RE-REFINED STRUCTURE OF 1TE0 - STRUCTURAL ANALYSIS of DEGS, A STRESS SENSOR OF THE… · the same entry in another collection · chain A against A, TM-score 1.00

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Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt H9UXC8
Elsewhere: RCSB PDB 4RQY · PDBe 4RQY · UniProt H9UXC8

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