Research workbench
Crystal structure of the outer membrane lipoprotein receptor lolb complexed with PEGMME2000
Analyse Crystal structure of the outer membrane lipoprotein receptor lolb complexed… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1IWN
- Type
- protein
- Length
- 177 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Outer membrane lipoprotein lolb
- UniProt
- P61320
- Ligands
- SO4
- Pockets
- 2 · best druggability 0.75
Structure
x-ray diffraction · 1 distinct chain · 16% helix, 47% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Outer membrane lipoprotein lolb | protein | 177 | 16% helix, 47% strand | P61320 |
Ligands and binding sites
- SO4 · Sulfate ion · ion · 2 copies · chains A
- PG5 · 1-methoxy-2-[2-(2-methoxy-ethoxy]-ethane · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 185 | 0.75 | 0.90 | 25 | PG5 |
| 2 | 52 | 0.28 | 0.75 | 15 | empty |
Compared structures
- 1IWN · Crystal Structure of the Outer Membrane Lipoprotein Receptor LolB Complexed with… · the same entry in another collection · chain A against A, TM-score 1.00
- P61320 · AlphaFold monomer V2.0 prediction for outer-membrane lipoprotein lolb (P61320) · a predicted model of the same protein · chain A against A, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P61320
- Elsewhere: RCSB PDB 1IWN · PDBe 1IWN · UniProt P61320
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