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Crystal structure of the lipoprotein localization factor, lola

Analyse Crystal structure of the lipoprotein localization factor, lola in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 1IWL
Type: protein
Length: 177 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Outer-membrane lipoproteins carrier protein
UniProt: P61316
Ligands: ZN, MG
Pockets: 2 · best druggability 0.38

Structure

x-ray diffraction · 1 distinct chain · 16% helix, 50% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Outer-membrane lipoproteins carrier protein	protein	177	16% helix, 50% strand	P61316

Ligands and binding sites

ZN · Zinc ion · metal · 3 copies · chains A
MG · Magnesium ion · metal · 2 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	110	0.38	0.75	31	empty
2	59	0.30	0.75	15	empty

Compared structures

1IWL · Crystal Structure of the Lipoprotein Localization Factor, LolA · the same entry in another collection · chain A against A, TM-score 1.00
P61316 · AlphaFold monomer V2.0 prediction for outer-membrane lipoprotein carrier protein (P61316) · a predicted model of the same protein · chain A against A, TM-score 0.88

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P61316
Elsewhere: RCSB PDB 1IWL · PDBe 1IWL · UniProt P61316

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