Research workbench
Pamora tandem diguanylate cyclase - mutant phosphodiesterase, apo form
Analyse Pamora tandem diguanylate cyclase - mutant phosphodiesterase, apo form in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4RNF
- Type
- protein
- Length
- 425 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Motility regulator
- EC
- 2.7.7.65, 3.1.4.52
- UniProt
- Q9HVI8
- Pockets
- 3 · best druggability 0.62
Structure
x-ray diffraction · 1 distinct chain · 46% helix, 21% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Motility regulator (EC 2.7.7.65, 3.1.4.52) | protein | 425 | 46% helix, 21% strand | Q9HVI8 |
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 388 | 0.62 | 0.77 | 35 | empty |
| 2 | 126 | 0.44 | 0.77 | 19 | empty |
| 3 | 54 | 0.28 | 0.74 | 18 | empty |
Compared structures
- 4RNF · PaMorA tandem diguanylate cyclase - mutant phosphodiesterase, apo form · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9HVI8
- Elsewhere: RCSB PDB 4RNF · PDBe 4RNF · UniProt Q9HVI8
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