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Crystal structure of plpro from middle east respiratory syndrome (MERS) coronavirus

Analyse Crystal structure of plpro from middle east respiratory syndrome (MERS)… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 4RNA
Type: protein
Length: 321 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Papain-like protease
EC: 3.4.22.-
UniProt: K4LC41
Ligands: ZN, PO4
Pockets: 2 · best druggability 0.45

Structure

x-ray diffraction · 1 distinct chain · 25% helix, 38% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Papain-like protease (EC 3.4.22.-)	protein	321	25% helix, 38% strand	K4LC41

Ligands and binding sites

ZN · Zinc ion · metal · chains A
PO4 · Phosphate ion · ion · 4 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	127	0.45	0.77	25	empty
2	75	0.41	0.78	17	PO4

Modifications

Observed in the structure: 2 modified (oxidation).

Compared structures

4RNA · Crystal structure of PLpro from Middle East Respiratory Syndrome (MERS) coronavirus · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt K4LC41
Elsewhere: RCSB PDB 4RNA · PDBe 4RNA · UniProt K4LC41

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