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Crystal structure of keratin 4 binding domain of surface adhesin srr-1 of S.AGALACTIAE

Analyse Crystal structure of keratin 4 binding domain of surface adhesin srr-1 of… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 4RMB
Type: protein
Length: 296 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Serine rich repeat protein-1 (srr-1)
UniProt: Q8E473
Pockets: 4 · best druggability 0.58

Structure

x-ray diffraction · 2 distinct chains · 6% helix, 46% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Serine rich repeat protein-1 (srr-1)	protein	141	5% helix, 50% strand	Q8E473
B	Serine rich repeat protein-1 (srr-1)	protein	155	7% helix, 43% strand	Q8E473

Pockets

4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	178	0.58	0.81	26	empty
2	94	0.47	0.81	25	empty
3	55	0.36	0.79	13	empty
4	61	0.29	0.75	16	empty

Interfaces

1 interface between chains.

A–B · 2621 Å² buried · 45 hydrogen bonds · protein-protein

Compared structures

4RMB · Crystal structure of keratin 4 binding domain of surface adhesin Srr-1 of S.agalactiae · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q8E473
Elsewhere: RCSB PDB 4RMB · PDBe 4RMB · UniProt Q8E473

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