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Crystal structure of the N-terminal beta-barrel domain of pseudomonas aeruginosa oprf

Analyse Crystal structure of the N-terminal beta-barrel domain of pseudomonas… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 4RLC
Type: protein
Length: 135 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Outer membrane porin F
UniProt: P13794
Pockets: 1 · best druggability 0.79

Structure

x-ray diffraction · 1 distinct chain · 0% helix, 76% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Outer membrane porin F	protein	135	0% helix, 76% strand	P13794

Ligands and binding sites

C8E · (hydroxyethyloxy)tri(ethyloxy)octane · additive · 7 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	115	0.79	0.98	27	empty

Compared structures

4RLC · Crystal structure of the N-terminal beta-barrel domain of Pseudomonas aeruginosa OprF · the same entry in another collection · chain A against A, TM-score 1.00
P13794 · AlphaFold monomer V2.0 prediction for outer membrane porin F (P13794) · a predicted model of the same protein · chain A against A, TM-score 0.95

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P13794
Elsewhere: RCSB PDB 4RLC · PDBe 4RLC · UniProt P13794

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