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Crystal structure of magnetospirillum gryphiswaldense msr-1 holo-fur
Analyse Crystal structure of magnetospirillum gryphiswaldense msr-1 holo-fur in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4RAZ
- Type
- protein
- Length
- 268 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- DNA-binding transcriptional dual regulator of siderophore biosynthesis and TRANSPORT(FUR…
- UniProt
- V6F4Q0
- Ligands
- MN
- Pockets
- 2 · best druggability 0.42
Structure
x-ray diffraction · 1 distinct chain · 43% helix, 25% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | DNA-binding transcriptional dual regulator of siderophore biosynthesis and TRANSPORT(FUR family) | protein | 134 | 43% helix, 25% strand | V6F4Q0 |
Ligands and binding sites
- MN · Manganese (II) ion · metal · 4 copies · chains A, B
- EDO · 1,2-ethanediol · additive · 3 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 119 | 0.42 | 0.76 | 17 | empty |
| 2 | 102 | 0.40 | 0.77 | 18 | empty |
Interfaces
1 interface between chains.
- A–B · 1500 Ų buried · 26 hydrogen bonds · protein-protein
Compared structures
- 4RAZ · Crystal structure of Magnetospirillum gryphiswaldense MSR-1 holo-Fur · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt V6F4Q0
- Elsewhere: RCSB PDB 4RAZ · PDBe 4RAZ · UniProt V6F4Q0
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