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Crystal structure of a putative exported protein (BF0058) from bacteroides fragilis nctc 9343 at 2.60 a resolution

Analyse Crystal structure of a putative exported protein (BF0058) from bacteroides… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 4RAA
Type: protein
Length: 354 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Putative exported protein
UniProt: Q5LJ40
Ligands: PO4
Pockets: 3 · best druggability 0.70

Structure

x-ray diffraction · 1 distinct chain · 14% helix, 44% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Putative exported protein	protein	354	14% helix, 44% strand	Q5LJ40

Ligands and binding sites

PO4 · Phosphate ion · ion · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

3 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	309	0.70	0.83	50	empty
2	248	0.60	0.80	25	empty
3	56	0.30	0.75	15	empty

Modifications

Observed in the structure: 4 modified (engineered).

Compared structures

4RAA · Crystal structure of a Putative exported protein (BF0058) from Bacteroides fragilis NCTC… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q5LJ40
Elsewhere: RCSB PDB 4RAA · PDBe 4RAA · UniProt Q5LJ40

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