Research workbench
1.88 ångström resolution crystal structure of hypothetical protein JHP0584 from helicobacter pylori.
Analyse 1.88 ångström resolution crystal structure of hypothetical protein JHP0584 from… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4R7K
- Type
- protein
- Length
- 672 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Hypothetical protein JHP0584
- UniProt
- Q9ZLJ5
- Pockets
- 11 · best druggability 0.83
Structure
x-ray diffraction · 1 distinct chain · 28% helix, 42% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D | Hypothetical protein JHP0584 | protein | 168 | 28% helix, 42% strand | Q9ZLJ5 |
Pockets
11 pockets found on a 1 Å grid, 6 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1157 | 0.83 | 0.84 | 122 | empty |
| 2 | 554 | 0.83 | 0.88 | 55 | empty |
| 3 | 51 | 0.65 | 0.96 | 19 | empty |
| 4 | 472 | 0.65 | 0.77 | 49 | empty |
| 5 | 146 | 0.55 | 0.82 | 31 | empty |
Interfaces
6 interfaces between chains.
- B–C · 1213 Ų buried · 21 hydrogen bonds · protein-protein
- A–D · 1210 Ų buried · 20 hydrogen bonds · protein-protein
- A–B · 864 Ų buried · 3 hydrogen bonds · protein-protein
- C–D · 452 Ų buried · 0 hydrogen bonds · protein-protein
- B–D · 82 Ų buried · 0 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 20 modified (engineered, artifact).
Compared structures
- 4R7K · 1.88 Angstrom Resolution Crystal Structure of Hypothetical Protein jhp0584 from… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9ZLJ5
- Elsewhere: RCSB PDB 4R7K · PDBe 4R7K · UniProt Q9ZLJ5
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