Research workbench

Crystal structure of rhodostomin kkkrt mutant

Analyse Crystal structure of rhodostomin kkkrt mutant in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 4R5R
Type: protein
Length: 136 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Disintegrin rhodostomin
UniProt: P30403
Pockets: 1 · best druggability 0.39

Structure

x-ray diffraction · 1 distinct chain · 0% helix, 18% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	Disintegrin rhodostomin	protein	68	0% helix, 18% strand	P30403

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	116	0.39	0.75	26	empty

Interfaces

1 interface between chains.

A–B · 477 Å² buried · 9 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 12 disulfide (disulfide).

Compared structures

4R5R · Crystal structure of Rhodostomin KKKRT mutant · the same entry in another collection · chain A against A, TM-score 1.00
P30403 · AlphaFold monomer V2.0 prediction for zinc METALLOPROTEINASE/DISINTEGRIN (P30403) · a predicted model of the same protein · chain A against A, TM-score 0.84

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P30403
Elsewhere: RCSB PDB 4R5R · PDBe 4R5R · UniProt P30403

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.