Research workbench
The 1.55 a crystal structure of glycerol-3-phosphate acyltransferase
Analyse The 1.55 a crystal structure of glycerol-3-phosphate acyltransferase in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1IUQ
- Type
- protein
- Length
- 357 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Glycerol-3-phosphate acyltransferase
- EC
- 2.3.1.15
- UniProt
- P10349
- Ligands
- SO4
- Pockets
- 2 · best druggability 0.80
Structure
x-ray diffraction · 1 distinct chain · 52% helix, 12% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Glycerol-3-phosphate acyltransferase (EC 2.3.1.15) | protein | 357 | 52% helix, 12% strand | P10349 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 562 | 0.80 | 0.85 | 62 | SO4, GOL |
| 2 | 78 | 0.36 | 0.76 | 17 | empty |
Modifications
Observed in the structure: 7 modified (engineered).
Compared structures
- 1IUQ · The 1.55 A Crystal Structure of Glycerol-3-Phosphate Acyltransferase · the same entry in another collection · chain A against A, TM-score 1.00
- P10349 · AlphaFold monomer V2.0 prediction for glycerol-3-phosphate acyltransferase ATS12… · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P10349
- Elsewhere: RCSB PDB 1IUQ · PDBe 1IUQ · UniProt P10349
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