Research workbench
A pbp-like protein built from fragments of different folds
Analyse A pbp-like protein built from fragments of different folds in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4QWV
- Type
- protein
- Length
- 320 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- High-affinity leucine-specific transport system periplasmic binding protein, chemotaxis…
- UniProt
- Q8X6S7, Q56312
- Pockets
- 3 · best druggability 0.67
Structure
x-ray diffraction · 1 distinct chain · 46% helix, 20% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | High-affinity leucine-specific transport system periplasmic binding protein, chemotaxis protein chey | protein | 320 | 46% helix, 20% strand | Q8X6S7, Q56312 |
Pockets
3 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 345 | 0.67 | 0.81 | 38 | empty |
| 2 | 152 | 0.62 | 0.85 | 29 | empty |
| 3 | 62 | 0.29 | 0.74 | 13 | empty |
Modifications
Observed in the structure: 1 disulfide (disulfide).
Compared structures
- Q56312 · AlphaFold monomer V2.0 prediction for chemotaxis protein chey (Q56312) · a predicted model of the same protein · chain A against A, TM-score 0.32
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8X6S7
- Every structure of UniProt Q56312
- Elsewhere: RCSB PDB 4QWV · PDBe 4QWV · UniProt Q8X6S7 · UniProt Q56312
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