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Crystal structure of a DUF1672 family protein (SAV1486) from staphylococcus aureus subsp. aureus MU50 at 1.80 a resolution

Analyse Crystal structure of a DUF1672 family protein (SAV1486) from staphylococcus… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 4QPV
Type: protein
Length: 548 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Uncharacterized protein
UniProt: Q931R5
Pockets: 7 · best druggability 0.67

Structure

x-ray diffraction · 1 distinct chain · 42% helix, 23% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	Uncharacterized protein	protein	274	42% helix, 23% strand	Q931R5

Pockets

7 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	839	0.67	0.74	68	empty
2	168	0.44	0.74	32	empty
3	162	0.41	0.74	24	empty
4	70	0.35	0.77	12	empty
5	76	0.34	0.75	14	empty

Interfaces

1 interface between chains.

A–B · 321 Å² buried · 6 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 12 modified (engineered).

Compared structures

4QPV · Crystal structure of a DUF1672 family protein (SAV1486) from Staphylococcus aureus subsp.… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q931R5
Elsewhere: RCSB PDB 4QPV · PDBe 4QPV · UniProt Q931R5

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