Research workbench
Llama nanobody N02 raised against eaec T6SS tssm
Analyse Llama nanobody N02 raised against eaec T6SS tssm in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4QLR
- Type
- protein
- Length
- 252 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Llama nanobody N02 vh domain
- Pockets
- 2 · best druggability 0.51
Structure
x-ray diffraction · 2 distinct chains · 10% helix, 46% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Llama nanobody N02 vh domain | protein | 130 | 9% helix, 45% strand | — |
| B | Llama nanobody N02 vh domain | protein | 122 | 10% helix, 48% strand | — |
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 225 | 0.51 | 0.76 | 32 | empty |
| 2 | 50 | 0.23 | 0.72 | 15 | empty |
Interfaces
1 interface between chains.
- A–B · 348 Ų buried · 0 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 2 disulfide (disulfide).
Compared structures
- 4QLR · Llama nanobody n02 raised against EAEC T6SS TssM · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 4QLR · PDBe 4QLR
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