Research workbench
Crystal structure of a DUF5043 family protein (BACUNI_01052) from bacteroides uniformis atcc 8492 at 1.85 a resolution
Analyse Crystal structure of a DUF5043 family protein (BACUNI_01052) from bacteroides… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4QE0
- Type
- protein
- Length
- 345 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Hypothetical protein
- UniProt
- A7V0G7
- Ligands
- SO4
- Pockets
- 3 · best druggability 0.75
Structure
x-ray diffraction · 2 distinct chains · 26% helix, 29% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Hypothetical protein | protein | 178 | 26% helix, 28% strand | A7V0G7 |
| B | Hypothetical protein | protein | 167 | 26% helix, 30% strand | A7V0G7 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 827 | 0.75 | 0.79 | 62 | GOL |
| 2 | 161 | 0.62 | 0.84 | 26 | GOL |
| 3 | 79 | 0.33 | 0.74 | 16 | empty |
Interfaces
1 interface between chains.
- A–B · 1148 Ų buried · 9 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 46 modified (methylation, engineered).
Compared structures
- 4QE0 · Crystal structure of a DUF5043 family protein (BACUNI_01052) from Bacteroides uniformis… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A7V0G7
- Elsewhere: RCSB PDB 4QE0 · PDBe 4QE0 · UniProt A7V0G7
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