Research workbench
Crystal structure of magnesium protoporphyrin IX methyltransferase (chlm) from synechocystis pcc 6803 with bound SAM
Analyse Crystal structure of magnesium protoporphyrin IX methyltransferase (chlm) from… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4QDJ
- Type
- protein
- Length
- 208 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Magnesium-protoporphyrin O-methyltransferase
- EC
- 2.1.1.11
- UniProt
- Q55467
- Ligands
- SAM
- Pockets
- 1 · best druggability 0.71
Structure
x-ray diffraction · 1 distinct chain · 45% helix, 25% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Magnesium-protoporphyrin O-methyltransferase (EC 2.1.1.11) | protein | 208 | 45% helix, 25% strand | Q55467 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 287 | 0.71 | 0.85 | 43 | SAM |
Compared structures
- 4QDJ · Crystal structure of magnesium protoporphyrin IX methyltransferase (ChlM) from… · the same entry in another collection · chain A against A, TM-score 1.00
- Q55467 · AlphaFold monomer V2.0 prediction for magnesium-protoporphyrin O-methyltransferase… · a predicted model of the same protein · chain A against A, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q55467
- Elsewhere: RCSB PDB 4QDJ · PDBe 4QDJ · UniProt Q55467
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