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Crystal structure of a fimbrial protein (BVU_2522) from bacteroides vulgatus atcc 8482 at 2.55 a resolution
Analyse Crystal structure of a fimbrial protein (BVU_2522) from bacteroides vulgatus… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4QB7
- Type
- protein
- Length
- 333 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Uncharacterized protein
- UniProt
- A6L3B5
- Ligands
- SO4, CL
- Pockets
- 2 · best druggability 0.43
Structure
x-ray diffraction · 1 distinct chain · 6% helix, 43% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Uncharacterized protein | protein | 333 | 6% helix, 43% strand | A6L3B5 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 145 | 0.43 | 0.75 | 23 | empty |
| 2 | 65 | 0.34 | 0.77 | 17 | empty |
Modifications
Observed in the structure: 4 modified (engineered).
Compared structures
- 4QB7 · Crystal structure of a fimbrial protein (BVU_2522) from Bacteroides vulgatus ATCC 8482 at… · the same entry in another collection · chain A against A, TM-score 1.00
- A6L3B5 · AlphaFold monomer V2.0 prediction for fimbrium subunit FIM1C (A6L3B5) · a predicted model of the same protein · chain A against A, TM-score 0.95
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A6L3B5
- Elsewhere: RCSB PDB 4QB7 · PDBe 4QB7 · UniProt A6L3B5
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