Research workbench
Lpob C-terminal domain from escherichia COLI
Analyse Lpob C-terminal domain from escherichia COLI in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4Q6Z
- Type
- protein
- Length
- 270 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Penicillin-binding protein activator lpob
- UniProt
- Q1RD49
- Pockets
- 2 · best druggability 0.53
Structure
x-ray diffraction · 1 distinct chain · 35% helix, 27% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Penicillin-binding protein activator lpob | protein | 135 | 35% helix, 27% strand | Q1RD49 |
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 215 | 0.53 | 0.77 | 29 | empty |
| 2 | 124 | 0.36 | 0.73 | 24 | empty |
Interfaces
1 interface between chains.
- A–B · 652 Ų buried · 18 hydrogen bonds · protein-protein
Compared structures
- 4Q6Z · LpoB C-terminal domain from Escherichia coli · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q1RD49
- Elsewhere: RCSB PDB 4Q6Z · PDBe 4Q6Z · UniProt Q1RD49
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