Research workbench
2.75 ångström resolution crystal structure of uncharacterized protein from burkholderia cenocepacia J2315
Analyse 2.75 ångström resolution crystal structure of uncharacterized protein from… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4PUP
- Type
- protein
- Length
- 340 residues
- Chains
- 3
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Uncharacterized protein
- UniProt
- B4EGA9
- Pockets
- 3 · best druggability 0.58
Structure
x-ray diffraction · 3 distinct chains · 35% helix, 24% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Uncharacterized protein | protein | 112 | 37% helix, 23% strand | B4EGA9 |
| B | Uncharacterized protein | protein | 113 | 34% helix, 27% strand | B4EGA9 |
| C | Uncharacterized protein | protein | 115 | 36% helix, 23% strand | B4EGA9 |
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 456 | 0.58 | 0.74 | 55 | empty |
| 2 | 86 | 0.39 | 0.77 | 13 | empty |
| 3 | 51 | 0.27 | 0.74 | 20 | empty |
Interfaces
3 interfaces between chains.
- B–C · 833 Ų buried · 22 hydrogen bonds · protein-protein
- A–C · 268 Ų buried · 2 hydrogen bonds · protein-protein
- A–B · 171 Ų buried · 2 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 9 modified (engineered).
Compared structures
- 4PUP · 2.75 Angstrom resolution crystal structure of uncharacterized protein from Burkholderia… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt B4EGA9
- Elsewhere: RCSB PDB 4PUP · PDBe 4PUP · UniProt B4EGA9
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.