Research workbench

BOLA1 from arabidopsis thaliana

Analyse BOLA1 from arabidopsis thaliana in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 4PUG
Type: protein
Length: 178 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Bola like protein
UniProt: Q682I1
Pockets: 2 · best druggability 0.44

Structure

x-ray diffraction · 2 distinct chains · 39% helix, 23% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Bola like protein	protein	94	38% helix, 22% strand	Q682I1
B	Bola like protein	protein	84	40% helix, 24% strand	Q682I1

Pockets

2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	165	0.44	0.75	23	empty
2	50	0.32	0.78	14	empty

Interfaces

1 interface between chains.

A–B · 835 Å² buried · 11 hydrogen bonds · protein-protein

Compared structures

4PUG · BolA1 from Arabidopsis thaliana · the same entry in another collection · chain A against A, TM-score 1.00
Q682I1 · AlphaFold monomer V2.0 prediction for protein BOLA1, chloroplastic (Q682I1) · a predicted model of the same protein · chain B against A, TM-score 0.96

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q682I1
Elsewhere: RCSB PDB 4PUG · PDBe 4PUG · UniProt Q682I1

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