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The crystal structure of a putative SAM-dependent methyltransferase, ytqb, from bacillus subtilis
Analyse The crystal structure of a putative SAM-dependent methyltransferase, ytqb, from… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4PON
- Type
- protein
- Length
- 343 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Putative RNA methylase
- UniProt
- E0TY72
- Pockets
- 3 · best druggability 0.43
Structure
x-ray diffraction · 2 distinct chains · 37% helix, 29% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Putative RNA methylase | protein | 172 | 37% helix, 28% strand | E0TY72 |
| B | Putative RNA methylase | protein | 171 | 37% helix, 29% strand | E0TY72 |
Pockets
3 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 182 | 0.43 | 0.74 | 27 | empty |
| 2 | 125 | 0.41 | 0.75 | 32 | empty |
| 3 | 59 | 0.26 | 0.73 | 17 | empty |
Interfaces
1 interface between chains.
- A–B · 1580 Ų buried · 30 hydrogen bonds · protein-protein
Compared structures
- 4PON · The crystal structure of a putative SAM-dependent methyltransferase, YtqB, from Bacillus… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt E0TY72
- Elsewhere: RCSB PDB 4PON · PDBe 4PON · UniProt E0TY72
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