Research workbench

Mycobacterium tuberculosis reca glycerol bound low temperature structure iic-br

Analyse Mycobacterium tuberculosis reca glycerol bound low temperature structure iic-br in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 4PO9
Type: protein
Length: 310 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Protein reca, 1ST part, 2ND part
EC: 3.1.-.-
UniProt: P0A5U4
Ligands: NA
Pockets: 3 · best druggability 0.51

Structure

x-ray diffraction · 1 distinct chain · 40% helix, 23% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Protein reca, 1ST part, 2ND part (EC 3.1.-.-)	protein	310	40% helix, 23% strand	P0A5U4

Ligands and binding sites

NA · Sodium ion · metal · chains A
EDO · 1,2-ethanediol · additive · 2 copies · chains A
GOL · Glycerol · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	189	0.51	0.77	28	GOL, NA
2	195	0.50	0.76	38	empty
3	82	0.35	0.75	22	empty

Compared structures

4PO9 · Mycobacterium tuberculosis RecA glycerol bound low temperature structure IIC-BR · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P0A5U4
Elsewhere: RCSB PDB 4PO9 · PDBe 4PO9 · UniProt P0A5U4

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