Research workbench
Mycobacterium tuberculosis reca glycerol bound room temperature structure iic-rt
Analyse Mycobacterium tuberculosis reca glycerol bound room temperature structure iic-rt in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4PO1
- Type
- protein
- Length
- 308 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Protein reca
- EC
- 3.1.-.-
- UniProt
- P0A5U4
- Pockets
- 3 · best druggability 0.47
Structure
x-ray diffraction · 1 distinct chain · 41% helix, 23% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Protein reca (EC 3.1.-.-) | protein | 308 | 41% helix, 23% strand | P0A5U4 |
Ligands and binding sites
- GOL · Glycerol · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 178 | 0.47 | 0.76 | 28 | GOL |
| 2 | 67 | 0.36 | 0.77 | 20 | empty |
| 3 | 94 | 0.34 | 0.74 | 23 | empty |
Compared structures
- 4PO1 · Mycobacterium tuberculosis RecA glycerol bound room temperature structure IIC-RT · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0A5U4
- Elsewhere: RCSB PDB 4PO1 · PDBe 4PO1 · UniProt P0A5U4
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