Research workbench
Caffeic acid O-methyltransferase from sorghum bicolor
Analyse Caffeic acid O-methyltransferase from sorghum bicolor in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4PGG
- Type
- protein
- Length
- 720 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Caffeic acid O-methyltransferase
- EC
- 2.1.1.68
- UniProt
- C5YH12
- Pockets
- 7 · best druggability 0.77
Structure
x-ray diffraction · 1 distinct chain · 51% helix, 17% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Caffeic acid O-methyltransferase (EC 2.1.1.68) | protein | 360 | 51% helix, 17% strand | C5YH12 |
Pockets
7 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 765 | 0.77 | 0.81 | 69 | empty |
| 2 | 877 | 0.76 | 0.79 | 71 | empty |
| 3 | 213 | 0.59 | 0.81 | 27 | empty |
| 4 | 106 | 0.39 | 0.76 | 21 | empty |
| 5 | 112 | 0.38 | 0.75 | 20 | empty |
Interfaces
1 interface between chains.
- A–B · 4880 Ų buried · 84 hydrogen bonds · protein-protein
Compared structures
- 4PGG · Caffeic acid O-methyltransferase from Sorghum bicolor · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt C5YH12
- Elsewhere: RCSB PDB 4PGG · PDBe 4PGG · UniProt C5YH12
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.