Research workbench
X-ray crystal structure of 5-carboxymethyl-2-hydroxymuconate delta- isomerase from mycobacterium smegmatis
Analyse X-ray crystal structure of 5-carboxymethyl-2-hydroxymuconate delta- isomerase… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4PFZ
- Type
- protein
- Length
- 501 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- 5-carboxymethyl-2-hydroxymuconate delta-isomerase
- UniProt
- A0QUY6
- Ligands
- NA
- Pockets
- 2 · best druggability 0.35
Structure
x-ray diffraction · 2 distinct chains · 16% helix, 43% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | 5-carboxymethyl-2-hydroxymuconate delta-isomerase | protein | 250 | 16% helix, 44% strand | A0QUY6 |
| B | 5-carboxymethyl-2-hydroxymuconate delta-isomerase | protein | 251 | 15% helix, 41% strand | A0QUY6 |
Ligands and binding sites
- NA · Sodium ion · metal · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 74 | 0.35 | 0.76 | 19 | empty |
| 2 | 83 | 0.33 | 0.74 | 18 | empty |
Interfaces
1 interface between chains.
- A–B · 1251 Ų buried · 16 hydrogen bonds · protein-protein
Compared structures
- 4PFZ · X-ray Crystal Structure of 5-carboxymethyl-2-hydroxymuconate delta-isomerase from… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0QUY6
- Elsewhere: RCSB PDB 4PFZ · PDBe 4PFZ · UniProt A0QUY6
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