Research workbench
E. COLI MCBR/YNCC
Analyse E. COLI MCBR/YNCC in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4P9F
- Type
- protein
- Length
- 413 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Hth-type transcriptional regulator mcbr
- UniProt
- T9SVH4
- Pockets
- 5 · best druggability 0.83
Structure
x-ray diffraction · 2 distinct chains · 75% helix, 3% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Hth-type transcriptional regulator mcbr | protein | 212 | 76% helix, 4% strand | T9SVH4 |
| B | Hth-type transcriptional regulator mcbr | protein | 201 | 75% helix, 2% strand | T9SVH4 |
Pockets
5 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 196 | 0.83 | 0.97 | 28 | empty |
| 2 | 208 | 0.81 | 0.95 | 29 | empty |
| 3 | 303 | 0.65 | 0.81 | 45 | empty |
| 4 | 66 | 0.32 | 0.75 | 15 | empty |
| 5 | 69 | 0.31 | 0.74 | 15 | empty |
Interfaces
1 interface between chains.
- A–B · 1234 Ų buried · 14 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 14 modified (engineered).
Compared structures
- 4P9F · E. coli McbR/YncC · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt T9SVH4
- Elsewhere: RCSB PDB 4P9F · PDBe 4P9F · UniProt T9SVH4
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