Research workbench
X-ray crystal structure of pa protein from influenza strain H7N9
Analyse X-ray crystal structure of pa protein from influenza strain H7N9 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4P9A
- Type
- protein
- Length
- 383 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Polymerase pa
- UniProt
- M9V5W3
- Pockets
- 5 · best druggability 0.62
Structure
x-ray diffraction · 1 distinct chain · 44% helix, 21% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Polymerase pa | protein | 383 | 44% helix, 21% strand | M9V5W3 |
Ligands and binding sites
- GOL · Glycerol · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
5 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 170 | 0.62 | 0.83 | 29 | GOL |
| 2 | 68 | 0.38 | 0.78 | 17 | empty |
| 3 | 112 | 0.37 | 0.74 | 19 | empty |
| 4 | 66 | 0.35 | 0.77 | 14 | empty |
| 5 | 65 | 0.31 | 0.74 | 11 | empty |
Compared structures
- 4P9A · X-ray Crystal Structure of PA protein from Influenza strain H7N9 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt M9V5W3
- Elsewhere: RCSB PDB 4P9A · PDBe 4P9A · UniProt M9V5W3
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