Research workbench
ABC transporter system solute-bindng protein from conexibacter woesei dsm 14684
Analyse ABC transporter system solute-bindng protein from conexibacter woesei dsm 14684 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4P98
- Type
- protein
- Length
- 300 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Extracellular solute-binding protein
- UniProt
- D3F9N7
- Ligands
- BR
- Pockets
- 2 · best druggability 0.71
Structure
x-ray diffraction · 1 distinct chain · 43% helix, 20% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Extracellular solute-binding protein | protein | 300 | 43% helix, 20% strand | D3F9N7 |
Ligands and binding sites
- BR · Bromide ion · ion · 22 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 469 | 0.71 | 0.81 | 45 | BR |
| 2 | 72 | 0.36 | 0.77 | 19 | empty |
Modifications
Observed in the structure: 2 modified (methylation).
Compared structures
- 4P98 · ABC transporter system solute-bindng protein from Conexibacter woesei DSM 14684 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt D3F9N7
- Elsewhere: RCSB PDB 4P98 · PDBe 4P98 · UniProt D3F9N7
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.