Research workbench
Fadr, fatty acid responsive transcription factor from vibrio cholerae
Analyse Fadr, fatty acid responsive transcription factor from vibrio cholerae in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4P96
- Type
- protein
- Length
- 556 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Fatty acid metabolism regulator protein
- UniProt
- G6ZTG9
- Pockets
- 6 · best druggability 0.85
Structure
x-ray diffraction · 1 distinct chain · 71% helix, 2% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Fatty acid metabolism regulator protein | protein | 278 | 71% helix, 2% strand | G6ZTG9 |
Pockets
6 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 965 | 0.85 | 0.87 | 112 | empty |
| 2 | 69 | 0.47 | 0.83 | 20 | empty |
| 3 | 50 | 0.45 | 0.85 | 11 | empty |
| 4 | 66 | 0.29 | 0.74 | 13 | empty |
| 5 | 57 | 0.28 | 0.74 | 14 | empty |
Interfaces
1 interface between chains.
- A–B · 1873 Ų buried · 26 hydrogen bonds · protein-protein
Compared structures
- 4P96 · FadR, Fatty Acid Responsive Transcription Factor from Vibrio cholerae · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt G6ZTG9
- Elsewhere: RCSB PDB 4P96 · PDBe 4P96 · UniProt G6ZTG9
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