Research workbench
The crystal structures of ykl-39 in the absence of chitooligosaccharides was solved to resolutions of 2.4 ångström
Analyse The crystal structures of ykl-39 in the absence of chitooligosaccharides was… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4P8U
- Type
- protein
- Length
- 365 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Chitinase-3-like protein 2
- UniProt
- Q15782
- Ligands
- SO4
- Pockets
- 3 · best druggability 0.62
Structure
x-ray diffraction · 1 distinct chain · 35% helix, 23% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Chitinase-3-like protein 2 | protein | 365 | 35% helix, 23% strand | Q15782 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 407 | 0.62 | 0.76 | 43 | PEG |
| 2 | 86 | 0.33 | 0.74 | 19 | empty |
| 3 | 72 | 0.29 | 0.73 | 19 | empty |
Modifications
Observed in the structure: 2 disulfide (disulfide).
Compared structures
- 4P8U · The crystal structures of YKL-39 in the absence of chitooligosaccharides was solved to… · the same entry in another collection · chain A against A, TM-score 1.00
- Q15782 · AlphaFold monomer V2.0 prediction for chitinase-3-like protein 2 (Q15782) · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q15782
- Elsewhere: RCSB PDB 4P8U · PDBe 4P8U · UniProt Q15782
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