Research workbench
L-methionine gamma-lyase from citrobacter freundii with Y58F substitution
Analyse L-methionine gamma-lyase from citrobacter freundii with Y58F substitution in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4P7Y
- Type
- protein
- Length
- 396 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Methionine gamma-lyase
- UniProt
- M3DJ89
- Pockets
- 3 · best druggability 0.53
Structure
x-ray diffraction · 1 distinct chain · 42% helix, 16% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Methionine gamma-lyase | protein | 396 | 42% helix, 16% strand | M3DJ89 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 233 | 0.53 | 0.77 | 30 | empty |
| 2 | 165 | 0.50 | 0.78 | 29 | empty |
| 3 | 72 | 0.33 | 0.75 | 16 | empty |
Modifications
Observed in the structure: 2 modified (cofactor, oxidation).
Compared structures
- 4P7Y · L-methionine gamma-lyase from Citrobacter freundii with Y58F substitution · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt M3DJ89
- Elsewhere: RCSB PDB 4P7Y · PDBe 4P7Y · UniProt M3DJ89
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