Research workbench
Structural insights into higher-order assembly and function of the bacterial microcompartment protein pdua
Analyse Structural insights into higher-order assembly and function of the bacterial… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4P7V
- Type
- protein
- Length
- 516 residues
- Chains
- 6
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Polyhedral bodies
- UniProt
- B1VB62
- Pockets
- 2 · best druggability 0.41
Structure
x-ray diffraction · 1 distinct chain · 41% helix, 37% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D, E, F | Polyhedral bodies | protein | 86 | 41% helix, 37% strand | B1VB62 |
Ligands and binding sites
- GOL · Glycerol · additive · chains A, B, C, D, E, F
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 177 | 0.41 | 0.73 | 25 | GOL |
| 2 | 56 | 0.31 | 0.76 | 16 | empty |
Interfaces
6 interfaces between chains.
- B–D · 903 Ų buried · 12 hydrogen bonds · protein-protein
- A–E · 886 Ų buried · 13 hydrogen bonds · protein-protein
- C–E · 859 Ų buried · 9 hydrogen bonds · protein-protein
- A–F · 859 Ų buried · 10 hydrogen bonds · protein-protein
- B–F · 854 Ų buried · 10 hydrogen bonds · protein-protein
Compared structures
- 4P7V · Structural insights into higher-order assembly and function of the bacterial… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt B1VB62
- Elsewhere: RCSB PDB 4P7V · PDBe 4P7V · UniProt B1VB62
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