Research workbench
Structural insights into higher-order assembly and function of the bacterial microcompartment protein pdua
Analyse Structural insights into higher-order assembly and function of the bacterial… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4P7T
- Type
- protein
- Length
- 501 residues
- Chains
- 6
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Polyhedral bodies
- UniProt
- B1VB62
- Pockets
- 2 · best druggability 0.46
Structure
x-ray diffraction · 4 distinct chains · 41% helix, 37% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Polyhedral bodies | protein | 85 | 40% helix, 38% strand | B1VB62 |
| B, D, E | Polyhedral bodies | protein | 86 | 42% helix, 37% strand | B1VB62 |
| C | Polyhedral bodies | protein | 74 | 41% helix, 39% strand | B1VB62 |
| F | Polyhedral bodies | protein | 84 | 42% helix, 36% strand | B1VB62 |
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 209 | 0.46 | 0.74 | 24 | empty |
| 2 | 72 | 0.44 | 0.81 | 15 | empty |
Interfaces
6 interfaces between chains.
- B–F · 878 Ų buried · 9 hydrogen bonds · protein-protein
- D–E · 870 Ų buried · 12 hydrogen bonds · protein-protein
- D–F · 859 Ų buried · 11 hydrogen bonds · protein-protein
- A–C · 858 Ų buried · 11 hydrogen bonds · protein-protein
- A–E · 693 Ų buried · 9 hydrogen bonds · protein-protein
Compared structures
- 4P7T · Structural insights into higher-order assembly and function of the bacterial… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt B1VB62
- Elsewhere: RCSB PDB 4P7T · PDBe 4P7T · UniProt B1VB62
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