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Crystal structure of tatd

Analyse Crystal structure of tatd in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 4P5U
Type: protein
Length: 262 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Tat-linked quality control protein tatd
EC: 3.1.15.-
UniProt: P27859
Pockets: 1 · best druggability 0.47

Structure

x-ray diffraction · 1 distinct chain · 47% helix, 15% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Tat-linked quality control protein tatd (EC 3.1.15.-)	protein	262	47% helix, 15% strand	P27859

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	183	0.47	0.76	23	empty

Compared structures

4P5U · Crystal structure of TatD · the same entry in another collection · chain A against A, TM-score 1.00
P27859 · AlphaFold monomer V2.0 prediction for 3'-5' SSDNA/RNA exonuclease tatd (P27859) · a predicted model of the same protein · chain A against A, TM-score 0.98

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P27859
Elsewhere: RCSB PDB 4P5U · PDBe 4P5U · UniProt P27859

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