Research workbench
Crystal structure of DNA binding domain of K11 from kshv
Analyse Crystal structure of DNA binding domain of K11 from kshv in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4P55
- Type
- protein
- Length
- 201 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Viral IRF2-like protein
- UniProt
- Q2HR71
- Pockets
- 1 · best druggability 0.43
Structure
x-ray diffraction · 2 distinct chains · 34% helix, 24% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Viral IRF2-like protein | protein | 105 | 33% helix, 23% strand | Q2HR71 |
| B | Viral IRF2-like protein | protein | 96 | 35% helix, 25% strand | Q2HR71 |
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 120 | 0.43 | 0.77 | 19 | empty |
Interfaces
1 interface between chains.
- A–B · 96 Ų buried · 0 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 5 modified (engineered).
Compared structures
- 4P55 · Crystal structure of DNA binding domain of K11 from KSHV · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q2HR71
- Elsewhere: RCSB PDB 4P55 · PDBe 4P55 · UniProt Q2HR71
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