Research workbench
Chlamydia pneumoniae copn
Analyse Chlamydia pneumoniae copn in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4P40
- Type
- protein
- Length
- 288 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Copn
- UniProt
- Q9Z8L4
- Ligands
- FOR, DMN, CL, SO4
- Pockets
- 2 · best druggability 0.33
Structure
x-ray diffraction · 1 distinct chain · 77% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Copn | protein | 288 | 77% helix, 0% strand | Q9Z8L4 |
Ligands and binding sites
- FOR · Formyl group · ligand · 5 copies · chains A
- DMN · Dimethylamine · ligand · chains A
- CL · Chloride ion · ion · 4 copies · chains A
- SO4 · Sulfate ion · ion · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 71 | 0.33 | 0.75 | 16 | empty |
| 2 | 54 | 0.25 | 0.72 | 15 | empty |
Modifications
Observed in the structure: 3 modified (methylation).
Compared structures
- 4P40 · Chlamydia pneumoniae CopN · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9Z8L4
- Elsewhere: RCSB PDB 4P40 · PDBe 4P40 · UniProt Q9Z8L4
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