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Yajq protein (HI1034)

Analyse Yajq protein (HI1034) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 1IN0
Type: protein
Length: 324 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Yajq protein
UniProt: P44096
Ligands: MMC, HG, NA
Pockets: 2 · best druggability 0.62

Structure

x-ray diffraction · 1 distinct chain · 40% helix, 30% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	Yajq protein	protein	162	40% helix, 30% strand	P44096

Ligands and binding sites

MMC · Methyl mercury ion · ligand · chains A
HG · Mercury (II) ion · metal · 3 copies · chains A, B
NA · Sodium ion · metal · 2 copies · chains B, A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	139	0.62	0.85	26	empty
2	73	0.53	0.86	23	HG, MMC

Interfaces

1 interface between chains.

A–B · 539 Å² buried · 7 hydrogen bonds · protein-protein

Compared structures

1IN0 · Yajq protein (HI1034) · the same entry in another collection · chain A against A, TM-score 1.00
P44096 · AlphaFold monomer V2.0 prediction for UPF0234 protein HI_1034 (P44096) · a predicted model of the same protein · chain A against A, TM-score 0.95

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P44096
Elsewhere: RCSB PDB 1IN0 · PDBe 1IN0 · UniProt P44096

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