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Crystal structure of the papain-like protease of middle-east respiratory syndrome coronavirus
Analyse Crystal structure of the papain-like protease of middle-east respiratory… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4P16
- Type
- protein
- Length
- 315 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- ORF1A
- UniProt
- K4LC41
- Ligands
- ZN
- Pockets
- 3 · best druggability 0.37
Structure
x-ray diffraction · 1 distinct chain · 25% helix, 39% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | ORF1A | protein | 315 | 25% helix, 39% strand | K4LC41 |
Ligands and binding sites
- ZN · Zinc ion · metal · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 64 | 0.37 | 0.78 | 19 | empty |
| 2 | 64 | 0.37 | 0.78 | 14 | empty |
| 3 | 53 | 0.33 | 0.77 | 12 | empty |
Modifications
Observed in the structure: 1 modified (artifact).
Compared structures
- 4P16 · Crystal structure of the papain-like protease of Middle-East Respiratory Syndrome… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt K4LC41
- Elsewhere: RCSB PDB 4P16 · PDBe 4P16 · UniProt K4LC41
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