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Structure of the double stranded DNA binding type IV secretion protein tran from enterococcus

Analyse Structure of the double stranded DNA binding type IV secretion protein tran… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 4P0Y
Type: protein
Length: 228 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: AM32
UniProt: Q7BVV5
Pockets: 1 · best druggability 0.46

Structure

x-ray diffraction · 1 distinct chain · 46% helix, 21% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	AM32	protein	114	46% helix, 21% strand	Q7BVV5

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	184	0.46	0.76	31	empty

Interfaces

1 interface between chains.

A–B · 147 Å² buried · 3 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 2 modified (engineered).

Compared structures

4P0Y · Structure of the double stranded DNA binding type IV secretion protein TraN from… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q7BVV5
Elsewhere: RCSB PDB 4P0Y · PDBe 4P0Y · UniProt Q7BVV5

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