Research workbench
Yhde E33A (P212121 space group)
Analyse Yhde E33A (P212121 space group) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4P0E
- Type
- protein
- Length
- 377 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Maf-like protein yhde
- UniProt
- P25536
- Ligands
- SO4, PO4
- Pockets
- 5 · best druggability 0.63
Structure
x-ray diffraction · 2 distinct chains · 41% helix, 26% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Maf-like protein yhde | protein | 189 | 41% helix, 25% strand | P25536 |
| B | Maf-like protein yhde | protein | 188 | 40% helix, 27% strand | P25536 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
5 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 190 | 0.63 | 0.83 | 34 | PO4 |
| 2 | 299 | 0.61 | 0.79 | 41 | PO4, SO4 |
| 3 | 68 | 0.35 | 0.76 | 14 | empty |
| 4 | 50 | 0.34 | 0.79 | 14 | empty |
| 5 | 75 | 0.34 | 0.75 | 14 | empty |
Interfaces
1 interface between chains.
- A–B · 1047 Ų buried · 17 hydrogen bonds · protein-protein
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P25536
- Elsewhere: RCSB PDB 4P0E · PDBe 4P0E · UniProt P25536
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