Research workbench
GLNK2 from haloferax mediterranei complexed with ATP
Analyse GLNK2 from haloferax mediterranei complexed with ATP in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4OZN
- Type
- protein
- Length
- 333 residues
- Chains
- 3
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Nitrogen regulatory protein P-II
- UniProt
- B8ZYW1
- Ligands
- ATP, SO4
- Pockets
- 3 · best druggability 0.67
Structure
x-ray diffraction · 3 distinct chains · 32% helix, 35% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Nitrogen regulatory protein P-II | protein | 116 | 35% helix, 34% strand | B8ZYW1 |
| B | Nitrogen regulatory protein P-II | protein | 104 | 31% helix, 38% strand | B8ZYW1 |
| C | Nitrogen regulatory protein P-II | protein | 113 | 28% helix, 35% strand | B8ZYW1 |
Ligands and binding sites
- ATP · Adenosine-5'-triphosphate · ligand · 3 copies · chains A, B, C
- SO4 · Sulfate ion · ion · 3 copies · chains A, B, C
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 301 | 0.67 | 0.82 | 39 | ATP |
| 2 | 249 | 0.67 | 0.84 | 36 | ATP |
| 3 | 189 | 0.65 | 0.85 | 27 | ATP |
Interfaces
3 interfaces between chains.
- A–B · 1253 Ų buried · 25 hydrogen bonds · protein-protein
- A–C · 1219 Ų buried · 23 hydrogen bonds · protein-protein
- B–C · 1187 Ų buried · 24 hydrogen bonds · protein-protein
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt B8ZYW1
- Elsewhere: RCSB PDB 4OZN · PDBe 4OZN · UniProt B8ZYW1
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